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Download ebook Biophysics and the Challenges of Emerging Threats

Download ebook Biophysics and the Challenges of Emerging Threats

Biophysics and the Challenges of Emerging Threats.cJoseph D Puglisi
Biophysics and the Challenges of Emerging Threats
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Author: Joseph D Puglisi
Number of Pages: 186 pages
Published Date: 05 Jun 2009
Publisher: Springer
Publication Country: Dordrecht, Netherlands
Language: English
ISBN: 9789048123674
File size: 16 Mb
File Name: Biophysics.and.the.Challenges.of.Emerging.Threats.pdf
Download Link: Biophysics and the Challenges of Emerging Threats
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Single-molecule techniques eliminate ensemble averaging, thus revealing transient or rare species in heterogeneous systems [1-3]. These approaches have been employed to probe myriad biological phenomena, including protein and RNA folding [4-6], enzyme kinetics [7, 8], and even protein biosynthesis [1, 9, 10]. In particular, immobilization-based fluorescence te- niques such as total internal reflection fluorescence microscopy (TIRF-M) have recently allowed for the observation of multiple events on the millis- onds to seconds timescale [11-13]. Single-molecule fluorescence methods are challenged by the instability of single fluorophores. The organic fluorophores commonly employed in single-molecule studies of biological systems display fast photobleaching, intensity fluctuations on the millisecond timescale (blinking), or both. These phenomena limit observation time and complicate the interpretation of fl- rescence fluctuations [14, 15]. Molecular oxygen (O) modulates dye stability. Triplet O efficiently 2 2 quenches dye triplet states responsible for blinking. This results in the for- tion of singlet oxygen [16-18]. Singlet O reacts efficiently with organic dyes, 2 amino acids, and nucleobases [19, 20]. Oxidized dyes are no longer fluor- cent; oxidative damage impairs the folding and function of biomolecules. In the presence of saturating dissolved O , blinking of fluorescent dyes is sup- 2 pressed, but oxidative damage to dyes and biomolecules is rapid. Enzymatic O -scavenging systems are commonly employed to ameliorate dye instability. 2 Small molecules are often employed to suppress blinking at low O levels.

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